Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015929179.1_cds_XP_016476549.1_68368
CDS Infomation

[gene=LOC107798106] [db_xref=GeneID:107798106] [protein=putative E3 ubiquitin-protein ligase RING1a isoform X2] [protein_id=XP_016476549.1] [location=join(25055..25313,25456..25495,26333..26391,29313..29394,29496..29616,29793..29834,30539..31072,31219..31326,31684..31890,31994..32029)] [gbkey=CDS]
Sequence

ATGCCAGCCCAGAAACGCTATTTGTCGAATTATCAAGATGACAATAACAACAACGAAGAC
GATGATGAGAACTCTCCCCAGCATCAGCACCGCCGGCGGAAACATTCACGACGTGTTGCC
GGCGAACAAACACGAGCTAATATGGAAGAGCAACAAGTAGATGAGCAGGAGGAAGAGGAA
GATGAGCAAACTCAAGCCCAAGATAATGATGATGAGGATGAGGATGATCAAGAGGAAATT
AACCAATCCTCTGAAGATGATTCTGAGGGAAGTGGCACTGACCCTGAAGCCTTTGATGAA
TTGATTGCCGTGTCACGATCTGAGATTCGCACCAATGTACAATGTCCTATATGCTTAGGT
ATTATCAAGAGAACTCGGGTTGTGATGGGATGCCAACACCGTTTTTGCAGAGAATGCATA
GATAAATCAATGAGACTGGGGAATAATGAATGCCCTGCTTGCCGCATACATTGTGCTAGT
CGACGGTCACTGAGAGATGACCCTGGATTTGATACCTTAATTGAGGCAATATATCCAGAC
GTTGAGAAGTACGAAGAGGAGGAGCTTGTCTTTCTTGAAGAGGAACGGGCACTCAATGAA
CAGATTCAAGCATCCATTGCCCAAATTTCTCAACGCCAATCTGAAGCACTAATTAAGAGG
CGCAAAGTTGGTAAAGACATAGCTGCTTCCTCTGCACAAAGAACACCTCGCAACTATCAC
AATGCTTATTCGAGAAGAAGAAGAAACAGTCAGGGGGCTGAACCTGAGCGATCTGATCCA
AATGAGAGTGAAAATGATGATCATGACAGGAATAAAGATTCACCTCCCAAGGATGAGCGT
GGAACACAAACCAAGTTCAGGAAGCGCCGGAGGCGCAAAGGAGCTCTGGCAACCCCGACT
TCTCCTTCAGCTGCCAGTCCAGACGGTGGACACATTGAAACTGCAGCAGAACTACCCAGA
GAAACCGTAGGTAATTCTACTGGACCTGCACTGAAGCCTGAAACACTTACTTGGGGAAGA
GGTGGTGTCCGAAGTCACAGTCGACATGGCAGTGCAAGCGGTAGCAGAAATGCTCGTAAC
ACTCGAATATCAAAGTTAGTTGATTATCTTGAAAGTGTCCGAACAAATGATGGTGAGTTA
AATATCCATCTTGAGCTTATTCCATTGGACAAACAAACAACACCAAGTCTGAAAAAGCCC
CATCTCTGCTGCAGGCCAAGTACATCAGTTGAACACCTCTACGAATTTGTTGCTCAGGAT
ATAAAATCACAAGTAAAAGATGTTGAATTACTGGCAGTAAAGGACAATACCACTGTTAAC
CATTCAACCTTAATGGATGCATCAAATATGCTAGCCCGAGTGGTCAGTGGGTCCAATGTT
ACTCTGCAAAGCTTGGAAAGGCAAGAAACTTTGGAAGGAATTAATTCAAGTTGCCCATTA
AATAAGAATCTGATCCTTGCTTACGTGCAAAATAATTCTGAGGTATGA

Peptide Sequence

PEP ID

XP_016476549.1
PEP Infomation

PREDICTED: putative E3 ubiquitin-protein ligase RING1a isoform X2 [Nicotiana tabacum]
Sequence

MPAQKRYLSNYQDDNNNNEDDDENSPQHQHRRRKHSRRVAGEQTRANMEEQQVDEQEEEE
DEQTQAQDNDDEDEDDQEEINQSSEDDSEGSGTDPEAFDELIAVSRSEIRTNVQCPICLG
IIKRTRVVMGCQHRFCRECIDKSMRLGNNECPACRIHCASRRSLRDDPGFDTLIEAIYPD
VEKYEEEELVFLEEERALNEQIQASIAQISQRQSEALIKRRKVGKDIAASSAQRTPRNYH
NAYSRRRRNSQGAEPERSDPNESENDDHDRNKDSPPKDERGTQTKFRKRRRRKGALATPT
SPSAASPDGGHIETAAELPRETVGNSTGPALKPETLTWGRGGVRSHSRHGSASGSRNARN
TRISKLVDYLESVRTNDGELNIHLELIPLDKQTTPSLKKPHLCCRPSTSVEHLYEFVAQD
IKSQVKDVELLAVKDNTTVNHSTLMDASNMLARVVSGSNVTLQSLERQETLEGINSSCPL
NKNLILAYVQNNSEV

Transcript Sequence

Gene sequence data has not been registered.